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Transcriptomics

  • COMMENTARY
    Help, there are ‘omics’ in my comparative physiology!
    Alex S. Torson, Yun-wei Dong, Brent J. Sinclair
    Journal of Experimental Biology 2020 223: jeb191262 doi: 10.1242/jeb.191262 Published 17 December 2020

    Summary: Practical advice for successful design and implementation of omics-based experiments and interpretation of the resulting data to evaluate and test hypotheses in comparative physiology.

  • RESEARCH ARTICLE
    The ghost of temperature past: interactive effects of previous and current thermal conditions on gene expression in Manduca sexta
    Meggan A. Alston, Jeeyun Lee, M. Elizabeth Moore, Joel G. Kingsolver, Christopher S. Willett
    Journal of Experimental Biology 2020 223: jeb213975 doi: 10.1242/jeb.213975 Published 3 April 2020

    Summary: Repeated high temperature exposure has diverse consequences for gene expression patterns in two recently diverged populations of Manduca sexta, leading to thermal acclimation or increased stress responses.

  • RESEARCH ARTICLE
    Variable vision in variable environments: the visual system of an invasive cichlid (Cichla monoculus) in Lake Gatun, Panama
    Daniel Escobar-Camacho, Michele E. R. Pierotti, Viktoria Ferenc, Diana M. T. Sharpe, Erica Ramos, Cesar Martins, Karen L. Carleton
    Journal of Experimental Biology 2019 222: jeb188300 doi: 10.1242/jeb.188300 Published 18 March 2019

    Summary: Examination of the visual system plasticity of the peacock bass, Cichla monoculus, shows that this species adapts to a changing environment by alternating the use of chromophores A1 and A2, and through differential gene expression in the retina.

  • RESEARCH ARTICLE
    Identification of novel circadian transcripts in the zebrafish retina
    Soundhar Ramasamy, Surbhi Sharma, Bharat Ravi Iyengar, Shamsudheen Karuthedath Vellarikkal, Sridhar Sivasubbu, Souvik Maiti, Beena Pillai
    Journal of Experimental Biology 2019 222: jeb192195 doi: 10.1242/jeb.192195 Published 10 January 2019

    Summary: Characterization of the day and night transcriptome of the adult zebrafish retina reveals novel circadian transcripts.

  • RESEARCH ARTICLE
    Exposure to CO2 influences metabolism, calcification and gene expression of the thecosome pteropod Limacina retroversa
    Amy E. Maas, Gareth L. Lawson, Alexander J. Bergan, Ann M. Tarrant
    Journal of Experimental Biology 2018 221: jeb164400 doi: 10.1242/jeb.164400 Published 13 February 2018

    Summary: Severity and duration of CO2 exposure influence calcification and respiration differentially in Limacina retroversa, as shown by organismal and gene expression responses, while captivity interactively influences respiration and gene expression.

  • SHORT COMMUNICATION
    Cognitive specialization for learning faces is associated with shifts in the brain transcriptome of a social wasp
    Ali J. Berens, Elizabeth A. Tibbetts, Amy L. Toth
    Journal of Experimental Biology 2017 220: 2149-2153; doi: 10.1242/jeb.155200

    Highlighted Article: Comparative brain transcriptomics of Polistes paper wasps identifies molecular mechanisms associated with individual facial recognition, which function in neural signaling and signal transduction.

  • RESEARCH ARTICLE
    Effects of high temperatures on threatened estuarine fishes during periods of extreme drought
    Ken M. Jeffries, Richard E. Connon, Brittany E. Davis, Lisa M. Komoroske, Monica T. Britton, Ted Sommer, Anne E. Todgham, Nann A. Fangue
    Journal of Experimental Biology 2016 219: 1705-1716; doi: 10.1242/jeb.134528

    Highlighted Article: An integrative approach to assess the impact of elevated water temperature on fishes of immediate conservation concern highlights the vulnerability of longfin smelt relative to delta smelt.

  • RESEARCH ARTICLE
    Diet and endocrine effects on behavioral maturation-related gene expression in the pars intercerebralis of the honey bee brain
    Marsha M. Wheeler, Seth A. Ament, Sandra L. Rodriguez-Zas, Bruce Southey, Gene E. Robinson
    Journal of Experimental Biology 2015 218: 4005-4014; doi: 10.1242/jeb.119420

    Summary: Transcriptomic profiling of the pars intercerebralis in the honey bee brain provides mechanistic insights into how neurosecretory signals mediate social behavior.

  • REVIEW
    The environmentally tuned transcriptomes of Mytilus mussels
    Brent L. Lockwood, Kwasi M. Connor, Andrew Y. Gracey
    Journal of Experimental Biology 2015 218: 1822-1833; doi: 10.1242/jeb.118190

    Summary: Abiotic factors, such as temperature and the tidal cycle, drive patterns of gene expression in Mytilus mussels that underlie whole-organism physiological states, which, in turn, influence biogeographic distributions.

  • REVIEW
    Considerations for the use of transcriptomics in identifying the ‘genes that matter’ for environmental adaptation
    Tyler G. Evans
    Journal of Experimental Biology 2015 218: 1925-1935; doi: 10.1242/jeb.114306

    Summary: The ability of transcriptomics to identify genes that underlie environmental adaptation is explored in the context of recent systems-level experiments that provide new insights into the relationship between gene expression and fitness.

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