Table 1.

Anopheles gambiae housekeeping cDNAs

Clus1R2GenBank match3E-value4Gi numb5PFAM match6E-value7Org8N9Function10F11Clone12FASTA13CLUSTAL14
432gi|7294669| CG10361 gene product6.00E-83gi|7294669pfam00222 aminotran_25.00E-49 Drosophila melanogaster Y2-amino-3ketobutyrate-Coa LigaseHNOSIGAGN10E60-43clu.txtAGN10E60-43aln.txt
1641gi|7299845| CG3172 gene product3.00E-65gi|7299845Smart smart00102 ADF1.00E-17 Drosophila melanogaster YActin depolarization factorHNoORFAGN10E60-164clu.txt
2231gi|7291724| tsr gene product2.00E-46gi|7291724pfam00241 cofilin_ADF7.00E-20 Drosophila melanogaster YActin depolarization factorHNoORFAGN10E60-223clu.txt
1461gi|14572580| arrestin [Anopheles gamb...3.00E-37gi|14572580pfam02752 arrestin_C3.00E-19 Anopheles gambiae NArrestinHNoORFAGN10E60-146clu.txt
731gi|7300478| ATPsyn-d gene product4.00E-24gi|7300478No matches found Drosophila melanogaster YATP synthaseHNoORFAGN10E60-73clu.txt
1791gi|7294882| ATPsyn-b gene product5.00E-38gi|7294882No matches found Drosophila melanogaster YATPsynthaseHANCHAGN10E60-179clu.txt
602gi|3065729| clathrin light chain3.00E-29gi|3065729pfam01086 Clathrin_lg_ch3.00E-26 Drosophila melanogaster YClathrin chainHNoORFAGN10E60-60clu.txtAGN10E60-60aln.txt
1811gi|7297903| CG6766 gene product2.00E-23gi|7297903pfam00668 Condensation0.001 Drosophila melanogaster YCondensation domain used in nonribosomal peptide synthesisHNoORFAGN10E60-181clu.txt
332gi|309068| cytochrome b [Anopheles1.00E-53gi|309068pfam00033 cytochrome_b_N2.00E-43 Anopheles gambiae NCytochrome bHANCHAGN10E60-33clu.txtAGN10E60-33aln.txt
186gi|309062| cytochrome c oxidase subunit5.00E-70gi|309062pfam00510 COX35.00E-41 Anopheles gambiae NCytochrome oxidaseHNOSIGAGN10E60-18clu.txtAGN10E60-18aln.txt
244gi|309058| cytochrome c oxidase subunit2.00E-70gi|309058pfam00115 COX12.00E-83 Anopheles gambiae NCytochrome oxidaseHNoORFAGN10E60-24clu.txtAGN10E60-24aln.txt
871gi|309058| cytochrome c oxidase subunit2.00E-41gi|309058pfam00115 COX11.00E-30 Anopheles gambiae NCytochrome oxidaseHNoORFAGN10E60-87clu.txt
1471gi|309058| cytochrome c oxidase subunit5.00E-11gi|309058No matches found Anopheles gambiae NCytochrome oxidaseHNOSIGAGN10E60-147clu.txt
1951gi|1946624| cytochrome c oxidase2.00E-84gi|1946624pfam00116 COX21.00E-45 Anopheles gambiae YCytochrome oxidaseHNoORFAGN10E60-195clu.txt
2161gi|7297373| CG7870 gene product1.00E-62gi|7297373pfam00535 Glycos_transf_24.00E-18 Drosophila melanogaster YDolichyl-phosphate betaglucosyltransferaseHNoORFAGN10E60-216clu.txt
362gi|12667408| elongation fact...6.00E-19gi|12667408pfam00679 EFG_C4.00E-12 Anopheles gambiae YElongation factorHNoORFAGN10E60-36clu.txtAGN10E60-36aln.txt
841gi|12328436| elongation factor 1 delt...1.00E-34gi|12328436LOAD_EF1B EF1B1.00E-30 Bombyx mori YElongation factorHNoORFAGN10E60-84clu.txt
2261gi|12667408| elongation fact...1.00E-89gi|12667408pfam00679 EFG_C2.00E-26 Anopheles gambiae YElongation factorHNOSIGAGN10E60-226clu.txt
2391gi|7297950| Elf gene product1.00E-103gi|7297950pfam00009 GTP_EFTU6.00E-19 Drosophila melanogaster YElongation factorHNOSIGAGN10E60-239clu.txt
651gi|7303599| BcDNA:GM12291 gene2.00E-22gi|7303599No matches found Drosophila melanogaster YER proteinHNoORFAGN10E60-65clu.txt
2491gi|7295381| CG10733 gene product3.00E-21gi|7295381pfam01105 EMP24_GP25L7.00E-09 Drosophila melanogaster YER proteinHNOSIGAGN10E60-249clu.txt
741gi|7303508| CG8860 gene product3.00E-20gi|7303508pfam00584 SecE2.00E-14 Drosophila melanogaster YER translocation proteinHANCHAGN10E60-74clu.txt
1231gi|7296662| CG1213 gene product [alt4.00E-24gi|7296662pfam00083 sugar_tr5.00E-06 Drosophila melanogaster YGlucose transporterHNoORFAGN10E60-123clu.txt
1161gi|7301644| BcDNA:GH07066 gene2.00E-21gi|7301644No matches found Drosophila melanogaster YGlycerol phosphate acyltransferaseHNoORFAGN10E60-116clu.txt
1031gi|7296006| GlyP gene product2.00E-57gi|7296006pfam00343 phosphorylase3.00E-38 Drosophila melanogaster YGlycogen phosphorylaseHNOSIGAGN10E60-103clu.txt
701gi|7293608| CG14207 gene product2.00E-44gi|7293608pfam00011 HSP206.00E-20 Drosophila melanogaster YHeat shock proteinHNoORFAGN10E60-70clu.txt
2351gi|7291835| CG4859 gene product2.00E-70gi|7291835pfam00045 hemopexin1.00E-11 Drosophila melanogaster YHemopexinHNOSIGAGN10E60-235clu.txt
1061gi|7301711| CG14525 gene product1.00E-29gi|7301711No matches found Drosophila melanogaster YHighly conserved among speciesHANCHAGN10E60-106clu.txt
1121gi|7293724| CG7770 gene product1.00E-25gi|7293724pfam01920 KE24.00E-21 Drosophila melanogaster YKE2 familyHNoORFAGN10E60-112clu.txt
611gi|7291246| mago gene product2.00E-55gi|7291246pfam02792 Mago_nashi2.00E-44 Drosophila melanogaster YMago nashi protein —salivary gland differentiation?HNoORFAGN10E60-61clu.txt
791gi|7299378| CG4591 gene product0.007gi|7299378No matches found Drosophila melanogaster YMembrane protein?HNoORFAGN10E60-79clu.txt
991gi|9624383| tetraspanin E118...1.00E-16gi|9624383pfam00335 transmembrane46.00E-39 Manduca sexta YMembrane protein?HNoORFAGN10E60-99clu.txt
303gi|309061| adenosine triphosphatase3.00E-62gi|309061pfam00119 ATP-synt_A1.00E-28 Anopheles gambiae NMitochondrial enzymeHNoORFAGN10E60-30clu.txtAGN10E60-30aln.txt
482gi|7297772| porin gene product1.00E-67gi|7297772pfam01459 Euk_porin5.00E-60 Drosophila melanogaster YMitochondrial proteinHNoORFAGN10E60-48clu.txtAGN10E60-48aln.txt
502gi|1438862| ADP/ATP carrier protein1.00E-101gi|1438862pfam00153 mito_carr9.00E-25 Anopheles gambiae NMitochondrial proteinHNoORFAGN10E60-50clu.txtAGN10E60-50aln.txt
338gi|10434098| unnamed protein product...0.002gi|10434098pfam02414 Borrelia_orfA0.002 Homo sapiens YMitochondrion genome gi|5834911HNoORFAGN10E60-3clu.txtAGN10E60-3aln.txt
2281gi|7297173| Nrv2 gene product [alt 2]5.00E-12gi|7297173pfam00287 Na_K-ATPase8.00E-05 Drosophila melanogaster YNa+/K+ ATPase subunitHNoORFAGN10E60-228clu.txt
1211gi|3037018| NADH dehydrogenase2.00E-05gi|3037018pfam01604 7tm_50.002 Bodo saltans YNADH dehydrogenaseHNoORFAGN10E60-121clu.txt
1691gi|309069| NADH dehydrogenase subunit 11.00E-83gi|309069pfam00146 NADHdh2.00E-71 Anopheles gambiae NNADH dehydrogenaseHNoORFAGN10E60-169clu.txt
1991gi|12882| NADH dehydrogenase subunit 50.1gi|12882pfam00001 7tm_16.00E-04 Crithidia oncopelti YNADH dehydrogenaseHNoORFAGN10E60-199clu.txt
512gi|1655708| NM23/nucleoside8.00E-48gi|1655708pfam00334 NDK3.00E-31 Xenopus laevis YNucleoside diphosphate kinaseHNOSIGAGN10E60-51clu.txtAGN10E60-51aln.txt
2011gi|2708713| ornithine decarboxylase4.00E-08gi|2708713pfam02100 ODC_AZ8.00E-06 Drosophila melanogaster YOrnithine decarboxylaseHNOSIGAGN10E60-201clu.txt
1201gi|7296285| CG5605 gene product [alt2.00E-85gi|7296285pfam01605 RF12.00E-20 Drosophila melanogaster YPeptide chain relase factorHNoORFAGN10E60-120clu.txt
1091gi|7303822| CG1418 gene product2.00E-45gi|7303822No matches found Drosophila melanogaster YPrenylated rab acceptorHNOSIGAGN10E60-109clu.txt
1821gi|7299121| Prosbeta3 gene product4.00E-96gi|7299121pfam00227 proteasome3.00E-27 Drosophila melanogaster YProteasome proteinHNOSIGAGN10E60-182clu.txt
1041gi|4115422| protein disulphide isomer...4.00E-06gi|4115422No matches found Antheraea pernyi YProtein disulphide isomerase?HNOSIGAGN10E60-104clu.txt
422gi|7302715| CG6370 gene product2.00E-04gi|7302715No matches found Drosophila melanogaster YRibophorinHNoORFAGN10E60-42clu.txtAGN10E60-42aln.txt
234gi|5690416| ribosomal protei...1.00E-32gi|5690416pfam00181 Ribosomal_L24.00E-25 Anopheles gambiae NRibosomal proteinHNoORFAGN10E60-23clu.txtAGN10E60-23aln.txt
283gi|7298519| CG10652 gene product3.00E-47gi|7298519pfam01248 Ribosomal_L7Ae1.00E-21 Drosophila melanogaster YRibosomal proteinHNOSIGAGN10E60-28clu.txtAGN10E60-28aln.txt
382gi|10242304| ribosomal protein S261.00E-59gi|10242304pfam01283 Ribosomal_S26e4.00E-56 Anopheles gambiae NRibosomal proteinHNOSIGAGN10E60-38clu.txtAGN10E60-38aln.txt
402gi|7294664| CG7283 gene product3.00E-69gi|7294664pfam00687 Ribosomal_L14.00E-35 Drosophila melanogaster YRibosomal proteinHNOSIGAGN10E60-40clu.txtAGN10E60-40aln.txt
452gi|4239711| ribosomal protein P29.00E-23gi|4239711pfam00428 60s_ribosomal3.00E-34 Ceratitis capitata YRibosomal proteinHNO SIGAGN10E60-45clu.txtAGN10E60-45aln.txt
492gi|7290609| CG4111 gene product3.00E-30gi|7290609pfam00831 Ribosomal_L294.00E-13 Drosophila melanogaster YRibosomal proteinHNoORFAGN10E60-49clu.txtAGN10E60-49aln.txt
522gi|4585827| ribosome associated membr...4.00E-11gi|4585827No matches found Rattus norvegicus YRibosomal proteinHNoORFAGN10E60-52clu.txtAGN10E60-52aln.txt
532gi|7301299| CG10423 gene product3.00E-40gi|7301299pfam01667 Ribosomal_S27e6.00E-21 Drosophila melanogaster YRibosomal proteinHNoORFAGN10E60-53clu.txtAGN10E60-53aln.txt
542gi|9438108| putative large s...2.00E-45gi|9438108pfam01199 Ribosomal_L34e8.00E-40 Aedes triseriatus YRibosomal proteinHNoORFAGN10E60-54clu.txtAGN10E60-54aln.txt
552gi|7291886| RpL19 gene product2.00E-79gi|7291886pfam01280 Ribosomal_L19e7.00E-70 Drosophila melanogaster YRibosomal proteinHNoORFAGN10E60-55clu.txtAGN10E60-55aln.txt
572gi|7291730| CG3195 gene product5.00E-68gi|7291730pfam00298 Ribosomal_L116.00E-38 Drosophila melanogaster YRibosomal proteinHNOSIGAGN10E60-57clu.txtAGN10E60-57aln.txt
921gi|7293042| CG9091 gene product1.00E-35gi|7293042pfam01907 Ribosomal_L37e6.00E-22 Drosophila melanogaster YRibosomal proteinHNOSIGAGN10E60-92clu.txt
1021gi|7300661| RpS20 gene product3.00E-51gi|7300661pfam00338 Ribosomal_S104.00E-33 Drosophila melanogaster YRibosomal proteinHNoORFAGN10E60-102clu.txt
1111gi|10439989| unnamed protein product...4.00E-23gi|10439989No matches found Homo sapiens YRibosomal proteinHNoORFAGN10E60-111clu.txt
1261gi|7291436| CG4046 gene product2.00E-65gi|7291436pfam00380 Ribosomal_S91.00E-41 Drosophila melanogaster YRibosomal proteinHNOSIGAGN10E60-126clu.txt
1271gi|7289746| Qm gene product [alt 1]2.00E-72gi|7289746pfam00826 Ribosomal_L10e2.00E-66 Drosophila melanogaster YRibosomal proteinHNOSIGAGN10E60-127clu.txt
1311gi|7291277| RpL29 gene product3.00E-22gi|7291277pfam01779 Ribosomal_L29e5.00E-13 Drosophila melanogaster YRibosomal proteinHNOSIGAGN10E60-131clu.txt
1321gi|1359478| put. S3a ribosomal protein4.00E-76gi|1359478pfam01015 Ribosomal_S3Ae9.00E-47 Anopheles gambiae NRibosomal proteinHNOSIGAGN10E60-132clu.txt
1421gi|7290749| CG3203 gene product [alt8.00E-66gi|7290749pfam00237 Ribosomal_L224.00E-10 Drosophila melanogaster YRibosomal proteinHNOSIGAGN10E60-142clu.txt
1451gi|5690418| ribosomal protei...2.00E-44gi|5690418pfam00833 Ribosomal_S17e8.00E-32 Anopheles gambiae NRibosomal proteinHNOSIGAGN10E60-145clu.txt
1601gi|7290065| RpL36 gene product4.00E-32gi|7290065pfam01158 Ribosomal_L36e7.00E-35 Drosophila melanogaster YRibosomal proteinHNoORFAGN10E60-160clu.txt
1661gi|7292864| CG2033 gene product [alt3.00E-65gi|7292864pfam00410 Ribosomal_S86.00E-37 Drosophila melanogaster YRibosomal proteinHNOSIGAGN10E60-166clu.txt
1701gi|9438110| putative large s...1.00E-45gi|9438110pfam00935 Ribosomal_L449.00E-24 Aedes triseriatus YRibosomal proteinHNOSIGAGN10E60-170clu.txt
1711gi|7301850| CG7808 gene product3.00E-64gi|7301850pfam01201 Ribosomal_S8e9.00E-52 Drosophila melanogaster YRibosomal proteinHNOSIGAGN10E60-171clu.txt
1911gi|7301368| CG4759 gene product8.00E-37gi|7301368pfam01777 Ribosomal_L27e3.00E-40 Drosophila melanogaster YRibosomal proteinHNOSIGAGN10E60-191clu.txt
2221gi|14585747| ribosomal protein L393.00E-19gi|14585747pfam00832 Ribosomal_L392.00E-15 Culex pipiens pallens YRibosomal proteinHNoORFAGN10E60-222clu.txt
2501gi|1245447| putative ribosomal protein1.00E-12gi|1245447No matches found Anopheles gambiae NRibosomal proteinHNoORFAGN10E60-250clu.txt
2511gi|7293850| CG6846 gene product1.00E-46gi|7293850pfam00467 Ribosomal_L244.00E-14 Drosophila melanogaster YRibosomal proteinHNOSIGAGN10E60-251clu.txt
2071gi|7291445| CG3751 gene product4.00E-52gi|7291445pfam01282 Ribosomal_S24e7.00E-29 Drosophila melanogaster YRibosomal proteinHNOSIGAGN10E60-207clu.txt
1721gi|7295253| Srp 19 gene product3.00E-17gi|7295253pfam01922 SRP192.00E-12 Drosophila melanogaster YRibosomal signal recognitionHNoORFAGN10E60-172clu.txt
2301gi|7295014| CG5651 gene product2.00E-95gi|7295014pfam00005 ABC_tran1.00E-24 Drosophila melanogaster YRNAse L inhibitorHNOSIGAGN10E60-230clu.txt
2171gi|4389443| SPC 21-kDa-like4.00E-63gi|4389443pfam00461 Peptidase_S262.00E-30 Drosophila melanogaster YSignal peptidaseHANCHAGN10E60-217clu.txt
2361gi|12835580| putative [Mus musculus]4.00E-08gi|12835580No matches found Mus musculus YSimilar to yeast Maf1pHNOSIGAGN10E60-236clu.txt
2431gi|7290606| CG3187 gene product8.00E-69gi|7290606LOAD_sir2 sir27.00E-32 Drosophila melanogaster YSir2 familyHNOSIGAGN10E60-243clu.txt
781gi|7299412| CG6666 gene product3.00E-34gi|7299412pfam01127 Sdh_cyt2.00E-33 Drosophila melanogaster YSuccinate dehydrogenase cytochrome b subunitHNoORFAGN10E60-78clu.txt
1671gi|7303341| CG4670 gene product7.00E-22gi|7303341pfam01500 Keratin_B20.002 Drosophila melanogaster YSulfhydryl oxidaseHNoORFAGN10E60-167clu.txt
313gi|7716428| thioredoxin 1 [A...7.00E-11gi|7716428pfam00085 thiored0.002 Anopheles gambiae NThioredoxinHNoORFAGN10E60-31clu.txtAGN10E60-31aln.txt
2471gi|6469517| translation init...1.00E-45gi|6469517pfam01287 eIF-5a2.00E-17 Spodoptera frugiperda YTranslation initiation factorHNOSIGAGN10E60-247clu.txt
472gi|7299413| CG4800 gene product3.00E-57gi|7299413pfam00838 TCTP4.00E-55 Drosophila melanogaster YTranslationally controlled tumour proteinHNOSIGAGN10E60-47clu.txtAGN10E60-47aln.txt
2251gi|7290103| EG:BACR7A4.5 gene product2.00E-27gi|7290103pfam00033 cytochrome_b_N0.009 Drosophila melanogaster YTranslocation proteinHNOSIGAGN10E60-225clu.txt
1651gi|7300467| CG14285 gene product6.00E-07gi|7300467No matches found Drosophila melanogaster YUnknown protein — conservedHNOSIGAGN10E60-165clu.txt
2091gi|10728827| VhaSFD gene product [alt1.00E-61gi|10728827pfam01602 Adaptin_N1.00E-05 Drosophila melanogaster YV-ATPase subunitHNoORFAGN10E60-209clu.txt
2291gi|1220128| vacuolar ATPase [Anopheles8.00E-57gi|1220128pfam01990 ATP-synt_F6.00E-31 Anopheles gambiae NV-ATPase subunitHNOSIGAGN10E60-229clu.txt
2441gi|10728827| VhaSFD gene product [alt2.00E-18gi|10728827pfam00607 gag_p240.004 Drosophila melanogaster YV-ATPase subunitHNOSIGAGN10E60-244clu.txt
1251gi|7303921| CG8029 gene product [alt2.00E-08gi|7303921No matches found Drosophila melanogaster YV-ATPase synthaseHNoORFAGN10E60-125clu.txt
2401gi|9502404| Hypothetical zin...7.00E-30gi|9502404pfam00096 zf-C2H21.00E-05 Homo sapiens YZinc finger proteinHNoORFAGN10E60-240clu.txt
  • 1 Clus, cluster number.

  • 2 R, number of sequences of a given custer (R, representation).

  • 3 GenBank match, best match to the GenBank database.

  • 4 E-value, indicates significance of match to NR sequence of previous column.

  • 5 Gi numb, GenBank accession number.

  • 6 PFAM match, best match to the PFAM database.

  • 7 E-value, indicates significance of match to CDD sequence of previous column.

  • 8 Org, organism where a match was found.

  • 9 N, Novel (Y, yes; N, no).

  • 10 Function, putative function or biological property.

  • 11 F, Function; H, housekeeping.

  • 12 Clone: NOSIG, no signal peptide detected by SignalP server; No ORF, absence of a open-reading frame; ANCH, anchor protein.

  • 13 FASTA, FASTA-formatted sequences.

  • 14 CLUSTAL, clustal alignment for two or more sequences.