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Accepted Manuscript
METHODS & TECHNIQUES
Bringing the analysis of animal orientation data full circle: model-based approaches with maximum likelihood
Robert R. Fitak, Sönke Johnsen
Journal of Experimental Biology 2017 : jeb.167056 doi: 10.1242/jeb.167056 Published 31 August 2017
Robert R. Fitak
Department of Biology, Duke University, Durham, NC 27708, USA
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  • For correspondence: rfitak9@gmail.com
Sönke Johnsen
Department of Biology, Duke University, Durham, NC 27708, USA
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Abstract

In studies of animal orientation, data are often represented as directions that can be analyzed using circular statistical methods. Although several circular statistical tests exist to detect the presence of a mean direction, likelihood-based approaches may offer advantages in hypothesis testing – especially when data are multimodal. Unfortunately, likelihood-based inference in animal orientation remains rare. Here, we discuss some of the assumptions and limitations of common circular tests and report a new R package called CircMLE to implement the maximum likelihood analysis of circular data. We illustrate the use of this package on both simulated datasets and an empirical example dataset in Chinook salmon (Oncorhynchus tshawytscha). Our software provides a convenient interface that facilitates the use of model-based approaches in animal orientation studies.

  • Received July 21, 2017.
  • Accepted August 25, 2017.
  • © 2017. Published by The Company of Biologists Ltd
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Keywords

  • Circular statistics
  • Unimodal
  • Bimodal
  • von Mises distribution
  • Rayleigh test

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Accepted Manuscript
METHODS & TECHNIQUES
Bringing the analysis of animal orientation data full circle: model-based approaches with maximum likelihood
Robert R. Fitak, Sönke Johnsen
Journal of Experimental Biology 2017 : jeb.167056 doi: 10.1242/jeb.167056 Published 31 August 2017
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Accepted Manuscript
METHODS & TECHNIQUES
Bringing the analysis of animal orientation data full circle: model-based approaches with maximum likelihood
Robert R. Fitak, Sönke Johnsen
Journal of Experimental Biology 2017 : jeb.167056 doi: 10.1242/jeb.167056 Published 31 August 2017

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