|
|
|
|||
| Home Help Feedback Subscriptions Archive Search Table of Contents | ||||
First published online February 13, 2009
Journal of Experimental Biology 212, 668-672 (2009)
Published by The Company of Biologists 2009
doi: 10.1242/jeb.022681
Characterization of amphioxus nebulin and its similarity to human nebulin
1 Department of Biology, Graduate School of Science, Chiba University, Chiba
263-8522, Japan
2 Center for Advanced Marine Research, Ocean Research Institute, University of
Tokyo, Tokyo 164-8639, Japan
* Author for correspondence (e-mail: sumiko{at}faculty.chiba-u.jp)
Accepted 2 December 2008
| Summary |
|---|
|
|
|---|
-actinin and connectin
(titin). These results suggest that the C-terminal region of amphioxus nebulin
plays a similar role in maintaining striated muscle structure to that of human
nebulin. This is the first report of the exact location of nebulin in
amphioxus muscle.
Key words:
-actinin, actin, chordate, connectin, muscle
| INTRODUCTION |
|---|
|
|
|---|
Within the sarcomere, the N-terminal region is located in the pointed end
of the thin filaments, the central region along the thin filaments and the
C-terminal region in the Z-line (Wang and
Wright, 1988
). Binding assays have revealed that each nebulin
repeat (SDXXYK) binds to actin (Chen et
al., 1993
; Lukoyanova et al.,
2002
). Furthermore, nebulin repeats 1–3, repeat
163–170, repeat 185–SH3 domain and the SH3 domain bind to
tropomodulin, desmin, connectin (also called titin), and myopalladin and
β-actinin (also called CapZ), respectively
(Bang et al., 2001
;
Bang et al., 2002
;
Jin and Wang, 1991
;
McElhinny et al., 2001
;
Witt et al., 2006
).
Existence of nebulin in invertebrates has not been reported; however,
sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) of
extracts of amphioxus striated muscle revealed bands corresponding to the size
of nebulin (Hu et al., 1986
;
Locker and Wild, 1986
). In
1997, Kimura et al. (Kimura et al.,
1997
) reported that one of several nebulin antibodies reacted with
a 750 kDa protein found in amphioxus striated muscle, and in 1999, Fock and
Hinssen (Fock and Hinssen,
1999
) prepared an antibody against this protein and showed that it
was located in the I-Z-I region of the sarcomere. However, because these
findings could have resulted from a nebulin-mimicking epitope or simply from
cross-immunoreactivity with an SH3 domain protein, this 750 kDa protein was
not proved to be nebulin.
In this study, for the first time, we cloned the C-terminal region of the 750 kDa protein identified in amphioxus striated muscle, examined its functional properties and compared it to vertebrate nebulin.
| MATERIALS AND METHODS |
|---|
|
|
|---|
SDS-PAGE and immunoblotting
A piece of freshly excised amphioxus striated muscle was dissolved in five
volumes of a solution containing 10% SDS, 40 mmol l–1
dithiothreitol, 10 mmol l–1 EDTA and 100 mmol
l–1 Tris–HCl (pH8.0). The solution with the dissolved
muscle was boiled for 3 min and clarified by centrifugation at
15,000g for 10 min. The supernatant proteins were separated by
SDS-PAGE using 2–6% gradient polyacrylamide gels
(acrylamide:methylenebisacrylamide, 30:1.5; w/w) or 2–15% gradient
polyacrylamide gels (acrylamide: methylenebisacrylamide, 30:0.8; w/w)
(Laemmli, 1970
).
The protein bands were electrically transferred onto a nitrocellulose
membrane (Towbin et al., 1979
)
and treated with primary antibody and horseradish-peroxidase-conjugated
anti-rabbit IgG secondary antibody (Code number: P-0399, Dako, Carpinteria,
CA, USA).
Antibody production
The cDNA fragment of amphioxus nebulin (1007–1848 bp of clone 5361)
was generated by restriction enzyme digestion
(SmaI–SalI) and inserted into the
PvuII–SalI site of the pGEX4T-3 vector (GE Healthcare,
Piscataway, NJ, USA). Recombinant GST-tagged protein was expressed in
Escherichia coli (E. coli) XL1 Blue-MRF' with 3 l of LB +
ampicillin culture medium under the conditions of OD600=0.5, IPTG
0.1 mmol l–1, 37°C and 3 h. The bacteria were harvested
by centrifugation (1500 g, 4°C, 10 min), dialyzed with 120
ml PBS, treated with 80 ml sample buffer, boiled for 10 min and subjected to
227 gels of 10% SDS-PAGE. The bands of recombinant protein were excised and
the recombinant protein was electrically extracted from the gels into a
running buffer solution (0.1% SDS, 25 mmol l–1 Tris, 192 mmol
l–1 glycine) at 400 mA for 16 h. The protein was dialyzed
with phosphate-buffered saline (PBS), and GST was deleted using thrombin
(Sigma-Aldrich Japan, Tokyo, Japan; 1/1000 volume of recombinant protein
solution) at 22°C for 16 h. The solution was added to the sample buffer
and subjected to 88 gels of 12.5% SDS-PAGE. The nebulin fragment without GST
was electrically extracted from the gel, dialyzed with PBS, conjugated with an
equal volume of Freund's incomplete adjuvant (Difco Laboratories, Detroit, MI,
USA) and injected three times (0.25, 0.9 and 0.1 mg protein, respectively)
into a rabbit. The antiserum was separated from the blood by
centrifugation.
Immunofluorescence microscopy
After skinning the amphioxus specimens and collecting the muscle tissue
under a stereoscopic microscope, the myofibers were stretched with relaxing
buffer (50 mmol l–1 KCl, 10 mmol l–1 EGTA,
10 mmol l–1 NaPO4, 3 mmol l–1 ATP
and 0.5% Triton X-100; pH7.5) and fixed with buffer (3.5% formaldehyde, 45
mmol l–1 KCl, 9 mmol l–1 EGTA, 9 mmol
l–1 NaPO4, 2.7 mmol l–1 ATP and
0.45% Triton X-100; pH 7.5) for 1 min. The tissue was homogenized five times
for 2 s each in PBS containing 0.5 mmol l–1 leupeptin using
Ultra-turrax T-25 (IKA-Labortechnik, Staufen, Germany) and then fixed on a
glass slide. The samples were fixed with 3.7% formaldehyde in PBS for 15 min,
washed twice with PBS for 5 min each and blocked with 1% bovine serum albumin
(BSA) in PBS for 15 min. The fixed samples were stained with amphioxus nebulin
(1:50) and
-actinin A7811 (1:800; Sigma-Aldrich Japan, Tokyo, Japan)
antibodies for 12 h, washed three times with PBS for 10 min and reacted with
Alexa Fluor 488 (1:2500)- and Alexa Fluor 546 (1:4000)-conjugated secondary
antibodies (Invitrogen, Carlsbad, CA, USA). The samples were then washed three
times with PBS for 15 min, fixed with 3.7% formaldehyde in PBS for 15 min and
washed with PBS for 15 min. Anti-fador was added to the samples and they were
covered with a cover glass. Fluorescence was observed with fluorescence
microscope (Zeiss Axioskop 2 plus; Carl Zeiss, Oberkochen, Germany).
Protein preparation
The cDNA fragments of amphioxus nebulin repeats 3–9 (AN3–9) and
the unique region of the SH3 domain (U–SH3) generated by restriction
enzyme digestion were cloned into the pGEX6P series (GE Healthcare,
Piscataway, NJ, USA). The recombinant proteins tagged with GST were expressed
in E. coli BL21 (DE3) pLysS in 250 ml LB containing ampicillin. The
conditions were OD600=0.5, IPTG 0.5 mmol l–1,
37°C and 3 h. The bacteria were harvested by centrifugation (1000
g, 4°C, 10 min). The bacteria with the GST-fusion proteins
were dissolved in PBS (140 mmol l–1 NaCl, 10 mmol
l–1 Na2HPO4, 2.7 mmol
l–1 KCl and 1.8 mmol l–1
KH2PO4; pH 7.3), frozen at –80°C for 20 min,
sonicated at output 2 for 1 min (TOMY UD-200; Tomy Seiko, Tokyo, Japan) and
centrifuged at 14,000 g for 30 min at 4°C. The supernatant
was loaded onto a 2 ml glutathione Sepharose 4B column (GE Healthcare,
Piscataway, NJ, USA), washed with PBS and eluted with 10 mmol
l–1 glutathione (reduced) in 50 mmol l–1
Tris–HCl (pH 8.0). For the co-sedimentation assay, GST was deleted from
GST–AN3–9 on a column using PreScission Protease (GE Healthcare,
Piscataway, NJ, USA) with buffer (50 mmol l–1 Tris, 150 mmol
l–1 NaCl, 1 mmol l–1 EDTA and 1 mmol
l–1 DTT; pH 7.0) at 4°C for 12 h.
Actin was prepared from acetone powder of rabbit skeletal muscle using the
protocol described by Spudich and Watt
(Spudich and Watt, 1971
).
G-actin was polymerized in 0.1 mol l–1 KCl.
-Actinin
was prepared from rabbit skeletal muscle by the method of Goll et al.
(Goll et al., 1972
). Connectin
was prepared according to Kimura et al.
(Kimura et al., 1992
).
Co-sedimentation assay
F-actin (2.5 µmol l–1) or BSA (5 µmol
l–1) was mixed with AN3–9 (12.5 µmol
l–1) in 500 µl buffer (2 mmol l–1 Tris,
0.1 mmol l–1 CaCl2, 0.1 mol l–1
KCl and 0.01% NaN3; pH 8.0) at 25°C for 1 h. The mixture was
centrifuged (15,000g, 4°C, 30 min), and the supernatant
and pellet were diluted with SDS sample buffer and subjected to SDS-PAGE.
GST pull-down assay
GST–AN3–9 (2 µg for
-actinin pull down) or
GST–U–SH3 (2 µg for connectin pull-down) were bound to 20 µl
glutathione Sepharose 4B beads according to the manufacture's protocol. The
beads were washed twice with 150 µl buffer (80 mmol l–1
KCl, 2 mmol l–1 MgCl2, 10 mmol
l–1 Hepes, 1 mmol l–1 DTT and 2% Triton
X-100; pH 7.3), and bound with
-actinin (4 µg, 20 µl) or
connectin (5 µg, 150 µl) in buffer at 4°C for 1 h. They were washed
four times with 150µl buffer, dissolved in 20µl SDS sample buffer, and
subjected to SDS-PAGE. The gels were stained with Coomassie Brilliant
Blue.
| RESULTS |
|---|
|
|
|---|
|
|
|
-helix, 0% β-structure
and 47% random coil. The composition was similar to that of the secondary
structure of the C-terminal region of the human nebulin repeat (41%
-helix, 0% β-structure and 52% random coil) predicted using the
same program. Calculation of the isoelectric points (pIs) based on the
amphioxus C-terminal amino acid sequence revealed pIs of 5.6 and
7.1–10.8 (total pI=9.9) for Neb-1 and Neb-2–13, respectively,
indicating that the pIs of the amphioxus nebulin repeats are in accordance
with those of the human nebulin repeats (pI=5.6 for M172 and pI=10.0 for
M173–185) (Labeit and Kolmerer,
1995
The PGSIFDYEP of the last nebulin repeat (Neb-13) in amphioxus
(Fig. 1B) is conserved across
species, and corresponds to the last human nebulin repeat M185 (X83957)
(Labeit and Kolmerer, 1995
),
chicken nebulin repeat M65 (AB024330)
(Suzuki et al., 2000
), the
zebrafish nebulin-like protein (AL974314) and the nebulin-like protein
(nebulette) of vertebrate cardiac muscle (Y16350)
(Millevoi et al., 1998
;
Moncman and Wang, 1995
).
Furthermore, when we compared the C-terminal SH3 domain of amphioxus nebulin
to human (X83957), chicken (AB024330) and zebrafish (AL974314), we observed a
high homology (approximately 65%) with human nebulin
(Fig. 2), revealing that the
amino acid sequence of the SH3 domain was well conserved across species
(Fig. 2). However, two unique
regions, which are between Neb-12 and Neb-13 and between Neb-13 and the SH3
domain, showed no homology with any region of the human nebulin
(Fig. 2).
The domain structure, secondary structure and the pIs of the C-terminal region of amphioxus nebulin are similar to those of vertebrate nebulin.
Localization of the amphioxus nebulin C-terminal region in the sarcomere
To confirm that the cDNA was from amphioxus nebulin and to determine the
position of the C-terminal region within the sarcomere, we prepared an
antibody (PcAmpN) using the recombinant protein from Neb 10 to the former half
of the unique region as an antigen (Fig.
1A, Fig. 3A).
Immunoblot analysis showed that the antibody reacted only with the 750 kDa
band and not with other proteins such as nebulette (107 kDa;
Fig. 3B,C). This confirmed the
sequence to be that of amphioxus nebulin cDNA.
Double immunostaining of amphioxus myofibrils with PcAmpN and an
-actinin monoclonal antibody revealed that the C-terminal region of
amphioxus nebulin is localized to the Z-line of the sarcomere and co-localizes
with
-actinin (Fig.
4).
|
-actinin and connectin
|
Next, we examined binding of the amphioxus nebulin repeats with purified
-actinin by far-western blot analysis and a GST pull-down assay. The
results of the far-western blot analysis showed that
-actinin binds to
nebulin repeats 3–9 (supplementary material Fig. S1C). Furthermore, the
results of the GST pull-down assay showed that
-actinin precipitated
when added to the GST-fusion protein with nebulin repeats 3–9
(Fig. 6, lane 5), but not when
it was added to GST alone (Fig.
6, lane 6). The results of a control experiment showed that
amphioxus nebulin repeats 3–9 do not bind to BSA (supplementary material
Fig. S2).
|
|
| DISCUSSION |
|---|
|
|
|---|
In human nebulin, repeats M167–172 are negatively charged and repeats M173–185 are positively charged under physiological conditions. Similarly, in amphioxus nebulin, Neb-1 is negatively charged and Neb-2–13 are positively charged. Thus, the charge transition is conserved between human and amphioxus nebulins. Although the function of the charge transition region is unknown, its localization within or around the Z-line suggests that it is involved in the formation and structural maintenance of the Z-line.
-Actinin is the main component of the Z-line of the sarcomere, and
is also the location of the N terminus of connectin (titin)
(Tskhovrebova and Trinick,
2003
). We showed that amphioxus nebulin bind to
-actinin
and connectin (titin) and that the C-terminal region of amphioxus nebulin is
localized in the Z-line of the sarcomere
(Fig. 4). These results suggest
that amphioxus nebulin maintains the structure of the Z line by binding to
-actinin and connectin, similar to the C-terminal region of human
nebulin.
We predicted that the secondary structure of the amphioxus nebulin repeat
region was 48%
-helix and 0% β-structure. The secondary structure
was similar to that of the C-terminal region of the human nebulin repeat. This
is because both amphioxus and human nebulins have the consensus sequences
PEXXRXK at the N terminus, SXXXYX in the middle and GKXXTXXXXT at the C
terminus of each repeat. As a result, amphioxus nebulin functions in a similar
manner to human nebulin, even though there is only a 26% homology at the
sequence level. This is because the helical part of the protein can present
the conserved surface and interact to other proteins
(McLachlan and Karn,
1982
).
The thin filaments in the striated muscle of arthropods and mollusks do not
have a uniform length of 1 µm as in vertebrate skeletal muscle, whereas the
thin filaments of amphioxus striated muscle have a uniform length of 1 µm
(Hagiwara et al., 1971
).
Although amphioxus is not a vertebrate and is the phylogenetically lowest
chordate, its nebulin functions similarly to vertebrate nebulin, which might
explain the uniform 1 µm size of the thin filaments in amphioxus striated
muscle. Taken together with our result of the interaction of amphioxus nebulin
with actin,
-actinin and connectin, the thin filaments in amphioxus
striated muscle might be maintained in a manner identical or similar to that
of the thin filaments of vertebrate skeletal muscle.
| Footnotes |
|---|
Supplementary material available online at http://jeb.biologists.org/cgi/content/full/212/5/668/DC1
| References |
|---|
|
|
|---|
Bang, M. L., Mudry, R. E., McElhinny, A. S., Trombitas, K.,
Geach, A. J., Yamasaki, R., Sorimachi, H., Granzier, H., Gregorio, C. C. and
Labeit, S. (2001). Myopalladin, a novel 145-kilodalton
sarcomeric protein with multiple roles in Z-disc and I-band protein
assemblies. J. Cell Biol.
153,413
-427.
Bang, M. L., Gregorio, C. and Labeit, S. (2002). Molecular dissection of the interaction of desmin with the C-terminal region of nebulin. J. Struct. Biol. 137,119 -127.[CrossRef][Medline]
Chen, M. J., Shih, C. L. and Wang, K. (1993).
Nebulin as an actin zipper: a two-module nebulin fragment promotes actin
nucleation and stabilizes actin filaments. J. Biol.
Chem. 268,20327
-20334.
Fock, U. and Hinssen, H. (1999). Identification and localisation of nebulin as a thin filament component of invertebrate chordate muscles. J. Comp. Physiol. 169,555 -560.
Goll, D. E., Suzuki, A., Temple, J. and Holmes, G. R.
(1972). Studies on purified
-actinin. I. Effect of
temperature and tropomyosin on the
-actinin-F-actin interaction.
J. Mol. Biol. 67,469
-488.[CrossRef][Medline]
Hagiwara, S., Henkart, P. M. and Kidokoro, Y.
(1971). Excitation-contraction coupling in amphioxus muscle
cells. J. Physiol. 219,233
-251.
Hu, D. H., Kimura, S. and Maruyama, K. (1986).
Sodium dodecyl sulfate gel electrophoresis studies of connectin-like high
molecular weight proteins of various types of vertebrate and invertebrate
muscles. J. Biochem. 99,1485
-1492.
Jin, J. P. and Wang, K. (1991). Cloning,
expression, and protein interaction of human nebulin fragments composed of
varying numbers of sequence modules. J. Biol. Chem.
266,21215
-21223.
Kimura, S., Matsuura, T., Ohtsuka, S., Nakauchi, Y., Matsuno, A. and Maruyama, K. (1992). Characterization and localization of alpha-connectin (titin 1): an elastic protein isolated from rabbit skeletal muscle. J. Muscle Res. Cell Motil. 13, 39-47.[CrossRef][Medline]
Kimura, S., Kawamura, Y., Watanabe, A., Kubokawa, K. and Maruyama, K. (1997). A connectin-like protein in amphioxus striated muscle. Zool. Sci. 14, 54.
Kubokawa, K., Azuma, N. and Tomiyama, M. (1998). A new population of the amphioxus (Branchiostoma belcheri) in the Enshu-Nada sea in Japan. Zool. Sci. 15,799 -803.[CrossRef]
Labeit, S. and Kolmerer, B. (1995). The complete primary structure of human nebulin and its correlation to muscle structure. J. Mol. Biol. 248,308 -315.[Medline]
Laemmli, U. K. (1970). Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227,680 -685.[CrossRef][Medline]
Locker, H. R. and Wild, D. J. C. (1986). A
comparative study of high molecular weight proteins in various types of muscle
across the animal kingdom. J. Biochem.
99,1473
-1484.
Lukoyanova, N., VanLoock, M. S., Orlova, A., Galkin, V. E., Wang, K. and Egelman, E. H. (2002). Each actin subunit has three nebulin binding sites: implications for steric blocking. Curr. Biol. 12,383 -388.[CrossRef][Medline]
McElhinny, A. S., Kolmerer, B., Fowler, V. M., Labeit, S. and
Gregorio, C. C. (2001). The N-terminal end of nebulin
interacts with tropomodulin at the pointed ends of the thin filaments.
J. Biol. Chem. 276,583
-592.
McElhinny, A. S., Kazmierski, S. T., Labeit, S. and Gregorio, C. C. (2003). Nebulin: the nebulous, multifunctional giant of striated muscle. Trends Cardiovasc. Med. 13,195 -201.[CrossRef][Medline]
McLachlan, A. D. and Karn, J. (1982). Periodic charge distributions in the myosin rod amino acid sequence match cross-bridge spacing in muscle. Nature 299,226 -231.[CrossRef][Medline]
Millevoi, S., Trombitas, K., Kolmerer, B., Kostin, S., Schaper, J., Pelin, K., Granzier, H. and Labeit, S. (1998). Characterization of nebulette and nebulin and emerging concepts of their roles for vertebrate Z-discs. J. Mol. Biol. 28,111 -123.
Mineta, K., Nakazawa, M., Cebria, F., Ikeo, K., Agata, K. and Gojobori, T. (2003). Origin and evolutionary process of the CNS elucidated by comparative genomics analysis of planarian ESTs. Proc. Natl. Acad. Sci. USA 13,7666 -7671.
Moncman, C. L. and Wang, K. (1995). Nebulette: a 107 kD nebulin-like protein in cardiac muscle. Cell Motil. Cytoskeleton 32,205 -225.[CrossRef][Medline]
Spudich, J. A. and Watt, S. (1971). The
regulation of rabbit skeletal muscle contraction. I. Biochemical studies of
the interaction of the tropomyosin-troponin complex with actin and the
proteolytic fragments of myosin. J. Biol. Chem.
246,4866
-4871.
Suzuki, T., Yajima, H., Maruyama, K. and Kimura, S. (2000). A 7.5-kb 3' terminal cDNA sequence of chicken skeletal muscle nebulin reveals its actin binding regions. Zool. Sci. 17,1095 -1099.[CrossRef][Medline]
Towbin, H., Staehelin, T. and Gordon, J.
(1979). Electrophoretic transfer of proteins from polyacrylamide
gels to nitrocellulose sheets: procedure and some applications.
Proc. Natl. Acad. Sci. USA
76,4350
-4354.
Tskhovrebova, L. and Trinick, J. (2003). Titin: properties and family relationship. Nat. Rev. Mol. Cell. Biol. 4,679 -689.[CrossRef][Medline]
Wang, K. (1982). Purification of titin and nebulin. Methods Enzymol. 85,264 -274.[CrossRef][Medline]
Wang, K. and Wright, J. (1988). Architecture of
the sarcomere matrix of skeletal muscle: immunoelectron microscopic evidence
that suggests a set of parallel inextensible nebulin filaments anchored at the
Z line. J. Cell Biol.
107,2199
-2212.
Witt, C. C., Burkart, C., Labeit, D., McNabb, M., Wu, Y., Granzier, H. and Labeit, S. (2006). Nebulin regulates thin filament length, contractility, and Z-disk structure in vivo. EMBO J. 25,3843 -3855.[CrossRef][Medline]
![]()
CiteULike
Complore
Connotea
Del.icio.us
Digg
Reddit
Technorati
Twitter What's this?
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||