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First published online March 30, 2006
Journal of Experimental Biology 209, 1516-1534 (2006)
Published by The Company of Biologists 2006
doi: 10.1242/jeb.02154
Median fin function in bluegill sunfish Lepomis macrochirus: streamwise vortex structure during steady swimming
Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
Present address: Department of Biology, University of Maryland, College Park, MD 20742, USA (e-mail: tytell{at}post.harvard.edu)
Accepted 7 February 2006
| Summary |
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Sunfish produce streamwise vortices from at least eight distinct places, including both the dorsal and ventral margins of the soft dorsal and anal fins, and the tips and central notched region of the caudal fin. I propose a three-dimensional structure of the vortex wake in which these vortices from the caudal notch are elongated by the dorso-ventral cupping motion of the tail, producing a structure like a hairpin vortex in the caudal fin vortex ring. Vortices from the dorsal and anal fin persist into the wake, probably linking up with the caudal fin vortices. These dorsal and anal fin vortices do not differ significantly in circulation from the two caudal fin tip vortices. Because the circulations are equal and the length of the trailing edge of the caudal fin is approximately equal to the combined trailing edge length of the dorsal and anal fins, I argue that the two anterior median fins produce a total force that is comparable to that of the caudal fin. To provide additional detail on how different positions contribute to total force along the posterior body, the change in vortex circulation as flow passes down the body is also analyzed. The posterior half of the caudal fin and the dorsal and anal fins add vortex circulation to the flow, but circulation appears to decrease around the peduncle and anterior caudal fin. Kinematic measurements indicate that the tail is angled correctly to enhance thrust through this interaction. Finally, the degree to which the caudal fin acts like a idealized two-dimensional plate is examined: approximately 25% of the flow near the tail is accelerated up and down, rather than laterally, producing wasted momentum, a loss not present in ideal two-dimensional theories.
Key words: fluid dynamics, streamwise vortex, particle image velocimetry, median fin, dorsal fin, anal fin, vortex wake, body shape, bluegill sunfish, Lepomis macrochirus
| Introduction |
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|
|
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Even though this approach has been quite successful, it is becoming more
apparent that neither the swimming motion nor the flow around the body are 2D.
For example, even fish with symmetrical (homocercal) tails, such as bluegill
sunfish Lepomis macrochirus and chub mackerel Scomber
japonicus, do not move them symmetrically
(Gibb et al., 1999
;
Lauder, 2000
); instead, both
fishes angle the dorsal edge of the fin into the tail motion, leading the
ventral lobe through the tail beat cycle. Sunfish and other fishes also cup
the dorsal and ventral edges of the caudal fin into the flow
(Bainbridge, 1963
;
Lauder, 2000
;
Webb, 1975
), a clearly
three-dimensional (3D) motion. Many fishes also angle their bodies to maintain
lift for horizontal swimming (Ferry and
Lauder, 1996
; He and Wardle,
1986
; Liao and Lauder,
2000
), showing the importance of fluid dynamic effects
perpendicular to the horizontal midline.
Second, several recent hydrodynamic studies have either directly observed
3D effects or inferred their importance. Sharks' asymmetrical tails produce a
large vortex ring with a smaller ring inside it produced by the upper lobe
(Wilga and Lauder, 2004
). A
more subtle effect from 3D body shape was described in eels
(Tytell and Lauder, 2004
).
Beginning with the observation
(Müller et al., 2001
;
Tytell and Lauder, 2004
) that
eels produce a different wake from previously studied fishes, like sunfish or
mackerel Scomber japonicus, they argued that differences in 2D
swimming kinematics were not sufficient to explain the hydrodynamic
differences. Instead, they proposed that the more important factor was the
different body shapes among the fishes
(Lauder and Tytell, 2006
).
Third, a 3D computational simulation of swimming fishes found that the flow
around a giant danio Danio aequipinnatus, which has a generalized
teleost morphology, could not be approximated by classical 2D models
(Zhu et al., 2002
). They
simulated motion strictly in the horizontal plane, using an approximation of
the giant danio's morphology, but found that this produced a combination of
flow down the body and transversely around the body. This combination of flow
directions invalidates the assumption of 2D flow in two classic theoretical
models (Lighthill, 1971
;
Wu, 1971
).
Three-dimensional body shape may also have subtle effects on swimming
efficiency. Three-dimensional airplane wings, for example, lose efficiency
because of effects at their tips. As the wings grow shorter relative to their
chord (i.e. their aspect ratio grows smaller), these losses become greater
(Barnard and Philpott, 1995
).
For example, Dong et al. simulated flapping wings with varying aspect ratios
(Dong et al., 2005
). In their
simulations, a 2D flapping wing, which does not have tip losses, has a peak
propulsive efficiency of greater than 25%, while a 3D wing with a low aspect
ratio (2.55; close to that of a bluegill tail, which is around 2.25) has a
maximum efficiency of about 20%. At the peak efficiencies, the 2D wing also
produces about twice the thrust of the 3D wing
(Dong et al., 2005
). The
performance of the simulated wings is less impressive
(Dong et al., 2005
) than some
other reports for flapping propulsors (e.g.
Barrett et al., 1999
report
propulsive efficiencies above 90%), but their study provides the only
systematic examination of tip losses in flapping propulsion. Regardless of the
exact magnitude, fish tails certainly suffer tip losses like the simulated
wings due to their 3D shape. Fishes such as tunas, with high-aspect ratio
lunate tails, may mitigate these effects, but even for them, the `cost of
three-dimensionality' will never be zero and may be substantial
(Dong et al., 2005
).
Finally, and more broadly, it is in the third dimension that the diversity
of fish body shapes, fin shapes and locations, and swimming modes become
important for function. The focus on the horizontal midline, while useful for
deriving general principles, cannot explain much of the evolution and
adaptation of this diversity. The dorsal and anal fins, for example, move in a
complex, active way, different from the body
(Standen and Lauder, 2005
),
and generate their own wakes (Lauder et
al., 2002
), changing the flow that the caudal fin encounters and
possibly enhancing its thrust (Akhtar and
Mittal, 2005
; Wolfgang et al.,
1999
; Zhu et al.,
2002
). To begin to approach the question of the adaptive
significance of fish morphology, one must examine 3D fluid flow.
Instantaneous 3D fluid flow measurements around swimming fish are not yet
feasible, however (but for a promising technique, see
Pereira and Gharib, 2002
).
Instead, 2D measurements of flow in the transverse plane at multiple positions
down the body can illuminate many of the salient features of the 3D flow
field. In particular, vortices aligned approximately along the swimming or
`streamwise' direction (termed `tip vortices' in the aerodynamics literature)
are shed nearly constantly by the dorsal and ventral margins of the median
fins, but have never been described for a swimming fish. The strength of these
vortices relates directly to the overall force and its distribution among
fins, and also to efficiency, because much of the energy used to produce them
is not useful for thrust.
Therefore, I examine the transverse flow around swimming bluegill sunfish using particle image velocimetry (PIV) in the transverse plane. Flow in multiple planes along the body is described, resulting in the first description of the streamwise vortex pattern around a swimming fish. Putting together the pattern described here with previous data from the horizontal and vertical planes, I propose a new form of the 3D vortex structure around a swimming sunfish. The average relative forces produced by each fin are approximated from the circulation of their vortices, indicating that the dorsal and anal fins together produce a force that is comparable to that produced by the caudal fin.
| Materials and methods |
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20°C)
in separate 40 l freshwater aquaria with a 12 h:12 h photoperiod, and were fed
earthworms three times weekly. Four fish of similar size (total body length
L=18.3±0.2 cm, mean ± s.e.m.; range 17.718.7 cm)
were selected for wake visualization experiments.
Swimming protocol and flow visualization
Sunfish swam individually in the center of the working area (28 cmx28
cmx80 cm) of a variable-speed freshwater flow tank. Steady swimming was
elicited at 1.20 L s1 (approximately 22 cm
s1), slightly faster than the gait transition speed in which
sunfish begin using their caudal fins together with the pectoral fins
(Drucker and Lauder, 2000
).
Animals were gently maneuvered into the center of the working section using a
wooden dowel, which was removed before filming a swimming sequence. Swimming
sequences were collected so that the light sheet illuminated six approximate
positions along the body: the trailing edge of the soft dorsal and anal fins,
the caudal peduncle, the base, middle and trailing edge of the caudal fin, and
the wake just posterior to the caudal fin. Wake sequences were carefully
chosen so that the tail did not intersect the light sheet, but was still
partially visible through it to allow the fish's location to be determined.
Far wake measurements were not made, due to the difficulty of determining the
fish's position precisely without being able to view it in the PIV images.
Fluid flow in the transverse plane was filmed using two high speed digital
cameras, a configuration that enabled use of the stereo PIV algorithm
(Gaydon et al., 1997
;
Prasad, 2000
;
Willert, 1997
) to correct the
strong parallax effect from flow passing through the plane. The cameras viewed
the swimming fish from behind through a 12.7 cmx15.2 cm front-surface
mirror placed at 45° in the flow (Fig.
1A). One camera, a Photron APX (Photron USA, Inc., San Diego, CA,
USA) with 1024x1024 pixel resolution, was placed so that it viewed the
transverse plane orthogonally through a 135 mm lens at a distance of
approximately 1.5 m. The other, a Photron FastCam with 1280x1024 pixel
resolution, was placed 12° off axis, and used a 50 mm lens at a distance
of about 0.72 m (Fig. 1A). The
off-axis camera used a Scheimpflüg lens mount (LaVision, Inc., Ypsilanti,
MI, USA) to focus on the entire plane, even though it was at an angle to the
camera sensor (see Nauen and Lauder,
2002b
; Prasad,
2000
for a more detailed description of the optical
configuration). The two cameras imaged an overlapping region approximately 12
cmx12 cm in area. An additional Photron FastCam was used to film the
silhouette of the fish from below (Fig.
1B) for simultaneous kinematic analysis.
|
The distance between the mirror and the light sheet was more than twice the
mirror's presented width, making effects from the mirror's bow wake negligible
in the light sheet plane. Additionally, the presented area of the mirror was
137 cm2, providing a constriction ratio of 1.2, which should not
affect the mean flow velocities substantially. This type of mirror
configuration has been used previously and has been shown not to affect
swimming kinematics (Ferry and Lauder,
1996
).
A 10 W argon-ion laser was used to project a 3 mm thick light sheet through
the side of the tank, illuminating near-neutrally buoyant 12 µm diameter
silver-coated glass beads (density 1.3 g cm3; Potter
Industries, Valley Forge, PA, USA). Particle motion was analyzed using a
stereo digital particle image velocimetry (PIV) algorithm
(Gaydon et al., 1997
;
Prasad, 2000
;
Willert, 1997
). Camera
calibration, the stereo PIV algorithm, and initial vector post-processing were
performed using DaVis 7.0.9 (LaVision, Ypsilanti, MI, USA). Cameras were
calibrated for each experimental procedure using a grid of crosses with 8
mmx8 mm spacing placed at three different streamwise positions separated
by 3 mm each. Cross displacements were fitted using a pinhole camera model
(Hartley and Zissermann,
2000
). Fitted parameters included the calibration grid position
and angle relative to the camera sensor, camera focal length, first and second
order radial distortion, principal point and pixel squareness. A
self-calibration procedure (Wieneke,
2005
) was performed on particle images from steady flow to adjust
the fitted light sheet position and angle. The PIV algorithm used three
passes, starting with a grid size of 32x32 pixels (approximately 4
mmx4 mm) overlapping by 25% and stepping down to 12x12 pixels (1.5
mmx1.5 mm) overlapping by 50%. A second order correlation for error
correction (Hart, 2000
) was
used in the first two passes. The flow field was initially assumed to have the
nominal through-plane flow velocity. After processing, vectors were eliminated
if the signal-to-noise ratio was less than 2, and by an iterative procedure
that used the median and RMS velocities in a 3x3 vector neighborhood
(similar to Nogueira et al.,
1997
). Finally, a 3x3 spatial smoothing filter was applied,
followed by a 25 Hz low-pass finite impulse response temporal filter. The
final vector fields had approximately 155x160 vectors.
To assess maximal in-plane error, simulations of particle motion analyzed
using the 2D PIV algorithm were compared to measured flow characteristics from
steady flow analyzed using the stereo PIV algorithm with post-processing and
all filters. Uniform and vortex motions were simulated. Simulations probably
produce overestimates of the error, because the stereo PIV algorithm, as
implemented in DaVis 7.0, uses the additional information from the second
camera to reduce the overall error. Maximum error in uniform flow was less
than 3 mm s1. Vorticity errors tended to be large (
30%)
for vorticity greater than 50 s1 (which was near the maximum
observed), probably due both to high shear and inaccuracy of numerical
derivatives. In contrast, circulation was accurately estimated to within less
than 10% for all but the weakest vortices. Peak locking, the tendency of PIV
to produce integer pixel displacements, caused overestimates of 30% or more
for vortices with circulations of less than 300 mm2
s1. Stereo analysis of steady flow showed that maximum
turbulence intensity (the standard deviation of flow velocity;
Tennekes and Lumley, 1972
) was
less than 7 mm s1, in-plane Reynolds stress
(Tennekes and Lumley, 1972
)
was less than 4 mN m2, and the standard deviation of background
vorticity was less than 5 s1.
The stereo algorithm was used to correct parallax, which it does implicitly
when estimating 3D vectors. Geometrical constraints of the setup did not allow
a large enough angle between the two cameras to reconstruct the through-plane
velocity component w with sufficient precision to detect the effect
of the swimming fish over the mean flow velocity. Error on the through-plane
velocity component is proportional to 1/tan(
), where
is the
angle between the two cameras (12° in this case)
(Prasad, 2000
); after
smoothing the flow velocities, variation in w was typically on the
order of 2550%. The additive effect of the swimming fish, in contrast,
is expected to have a maximum downstream magnitude of less than 20% of the
mean flow velocity (Drucker and Lauder,
2001
), lower than the measurement error. Nonetheless, the
dual-camera setup was necessary to remove parallax effects, which were
substantial (typically around 2 cm s1 at the edges of the
field) in a single-camera configuration.
Kinematic analysis
Silhouettes of the fish were filmed from a ventral view through a
front-surface mirror at a 45° angle using a Photron FastCam high-speed
digital video camera with 1280x1024 pixel resolution, synchronized with
the two used for flow visualization (Fig.
1B). Midline kinematics were digitized from the silhouettes using
custom Matlab 6.5.1 (MathWorks, Natick, MA, USA) routines. The algorithms were
modified only slightly from those previously described
(Tytell and Lauder, 2004
),
where they are explained in more detail. Briefly, the head and tail positions
were digitized manually to provide starting coordinates for a procedure that
used one-dimensional cross-correlation to find dark regions with the known
width of the fish body. Midlines were then smoothed simultaneously along the
body and through time using a 2D smoothing spline (Matlab spaps routine) to
produce a mean squared error of approximately 0.25 pixel2 (a 2D
analog of the method recommended by
Walker, 1998
). Once the
midline was determined, the position of the maximum lateral excursion at each
point on the body was tracked to determine the body amplitude, frequency, wave
speed and wave length. Changes in the algorithms from the procedure used by
Tytell and Lauder (Tytell and Lauder,
2004
) were primarily to avoid errors in the region illuminated by
the laser. The digitized midlines were then used to determine the distance of
the head from the light sheet, running along the curve of the body, to
estimate precisely the laser position relative to the fish.
The dorso-ventral position of the fish in the light sheet was determined from the PIV images. The dorsal and ventral edges of the body were manually digitized. Successive planes were aligned by matching the digitized dorso-ventral positions to the lateral profile of the body, based on a lateral image of one of the experimental individuals during swimming. Additionally, the outline of the body and fins in the transverse images was manually digitized, primarily for visualization purposes, but also for a simple kinematic analysis of fin curvature and for identification of near-body flow. Five points were identified along the body or caudal fin (upper and lower margins, center, and two additional points to approximate the curvature of the upper and lower lobes). If the dorsal or anal fins were visible, five points were also digitized along each. Spline-based interpolation was used to produce a smooth outline.
Vortex analysis
The circulation and geometry of vortex loops has been used previously to
estimate forces on swimming animals (e.g.
Drucker and Lauder, 1999
;
Müller et al., 1997
;
Nauen and Lauder, 2002a
;
Tytell, 2004
). In this
approximation, average force is proportional to the area circumscribed by a
vortex loop and the circulation
of the vortex, where circulation is
defined as:
![]() | (1) |
The goal of the vortex analysis in this study was to assess the relative
contributions of different fins to time-averaged overall force and to examine
at what points along the body forces are produced. For these purposes, the
circulation produced at different locations along the body is a sufficiently
accurate approximation of force production. No effort was made to examine
every possible source of vorticity, which would be necessary for an accurate
estimate of total force (Spedding et al.,
2003
), nor were assessments made of any unsteady effects
(Dabiri, 2005
). Because of the
uncertainties introduced by this method of analysis, I did not make direct
estimates of force; instead, I examined only circulation and use it to make
order of magnitude arguments about force.
An additional source of complexity in the analysis is the identification of
vortices. In fact, the precise definition of a vortex is currently debated in
the fluid dynamics community (see, e.g.,
Haller, 2005
). The intuitive
definition of a vortex as a region with rotating flow, for example, is
dependent on the choice of reference frame. The vorticity is also not useful
in unambiguously identifying vortices, because it is present in shear layers,
regions that are clearly not `vortices', in the intuitive sense. A better
metric (Adrian et al., 2000
;
Vollmers, 2001
), though not
the only one, for defining a vortex is the swirling strength, or discriminant
for complex eigenvalues:
![]() | (2) |
Because this study involved a large number of PIV data frames
(approximately 4800), a simple automatic procedure was developed for detecting
and tracking vortices. The goal of this procedure was not strict hydrodynamic
consistency, but rather a rapid identification of the vortices that would have
been found by a manual method (as used in all previous studies of swimming
hydrodynamics, including Müller et
al., 2001
; Nauen and Lauder,
2002a
; Tytell,
2004
). A custom Matlab program found connected regions with large
negative values of the swirling strength below a threshold
. Connected
regions below the threshold were identified using a standard image
segmentation routine (Matlab's bwlabeln function) in three dimensions (two
spatial dimensions and time) with 18 neighbor connectivity (for more
information on image segmentation, see
Gonzalez et al., 2003
).
Circulation was estimated for each region by generating an ellipse in each
frame that enclosed the thresholded area, interpolating the fluid velocity on
to the ellipse using a cubic spline, and numerically evaluating Eqn 1 using a
trapezoidal approximation (Matlab's trapz function;
Press et al., 1992
). Two
additional criteria were imposed to eliminate noise or small turbulent eddies:
(1), connected regions were required to persist over a minimum time
, and
(2), were required to reach a minimum circulation
min in at
least one frame.
The parameters
,
and
min were tuned
manually for each swimming bout until the main vortices (those shed by the
outer edges of the dorsal and anal fins and by the upper and lower edges of
the caudal fin) were consistently detected. Values of
were 200 or 300
s2;
was 12% of a tail beat cycle; and
min was 200 or 300 mm2 s1, the
minimum circulation that could be measured accurately. Detected vortices were
manually deleted when they overlapped the images of the fish's body or the
shadow region.
All vortices produced by this analysis will be termed `detected'. Of these
vortices, some were clearly formed at specific points along the fish's body,
and will thus be termed `identified'; others could not be definitively
assigned to a specific source, and will be called `unidentified'. Both the
circulation magnitude and positions of the identified vortices were fairly
insensitive to the choice of
,
and
min.
The terminology used for vortex shedding regions along the body is shown in
Fig. 1E, based on that in
Jenkins and Burkhead (Jenkins and
Burkhead, 1994
). Streamwise vortices are shed from the soft dorsal
fin along its dorsal margin (termed `outer edge') and along the free ventral
margin (`inner edge'). Equivalently, from the anal fin, vortices are shed from
the ventral margin (`outer edge') and the free dorsal margin (`inner edge').
Note that the inner edges of both fins are distinct from the bases of the
fins, where the fin rays insert on to the body. The dorsal and anal fin
together will be referred to as the anterior median fins, to distinguish them
from the caudal fin. Streamwise vortices from the caudal fin are shed at its
dorsal and ventral margins, termed `upper' and `lower', respectively. The
terms `dorsal' and `ventral' are avoided for the caudal fin, to avoid
confusion with the dorsal fin itself. Vortices are also shed along the
inclined edges of the notch in the fin, which will be termed the `upper' and
`lower' edges of the `caudal notch'. Because bluegill sunfish have an
emarginate tail, not a forked tail, this region is not called the fork
(Jenkins and Burkhead,
1994
).
Added circulation
As flow moves down the body, total vortex circulation should increase, both
by addition of new vortices and by changes in individual vortex strength. The
circulation added at a given point on the body is proportional to the lateral
or vertical force applied to the fluid there. To estimate additional
circulation, however, one must remove the contribution of circulation that
convects into the plane from upstream. This removal requires taking the
derivative of circulation with respect to position, following a fluid element
as it moves with the flow. Because of the noise in the data, a continuous
empirical model was regressed on the circulation magnitude of each vortex.
These models were then summed, smoothed to remove discrete jumps when a new
vortex was identified, and differentiated.
To define the regression model, first note that circulation is periodic
over a tail beat. Because the vortex moves with the local flow speed (which is
quite close to the global mean flow speed;
Lauder and Tytell, 2006
), the
peak circulation in this periodic function progresses down the body over time
(i.e. the periodic function has a phase shift linearly proportional to the
location along the body). For simplicity, a coordinate system that moves with
the global mean flow was chosen. The validity of this assumption is tested in
the Results section below. In this coordinate system, circulation could be
approximated by a model that is linear in its parameters, simplifying the
fitting procedure.
The coordinate system is defined as follows. Relative to the flow, position
along the body increases at a rate Ut, where U is the flow
speed and t is time. If the tail tip has a phase
when a fluid
element passes the tip, then a phase
can be defined as the tail's
phase when the element started at position s:
![]() | (3) |
To examine the vortex strength, circulation was fit using a sinusoidal
oscillation with an amplitude that changes linearly along the body,
![]() | (4) |
![]() | (5) |
This model is linear in its parameters and was therefore fitted using the multivariate regression function (regress) in the Matlab Statistics Toolbox 4.1. Each vortex's circulation was modeled only over the range of positions in which it was observed, without extrapolating further.
Several other equations were tested, but Eqn 5 proved to have the best combination of simplicity, explanatory power, and ease of fitting. A somewhat better model, mathematically, would be one with a constant phase shift in the sine terms, which would allow the cosine terms to be dropped. Simplifying this equation results in the same one as Eqn 5, but with a nonlinear restriction on aij and bij (aij/bij is constant for all values of i), which requires a nonlinear fitting algorithm. Unfortunately, the nonlinear fit did not converge well.
Without the above constraint, the general model in Eqn 5 can produce
nonlinear changes in circulation amplitude and phase along the body, due to
the different weights on the sine and cosine terms. Specifically, the overall
amplitude of each Fourier mode is:
![]() | (6) |
![]() | (7) |
The absolute values of the circulations from the separate models for each
identified vortex were summed to produce a model of the total circulation
magnitude. To avoid discrete jumps at positions where a vortex was first
detected, the sum was smoothed slightly using a Gaussian filter. The smoothing
makes physical sense, because streamwise vortices probably grow in strength
gradually along the edges of the fins, much as tip vortices grow along the
length of a highly swept airplane wing
(Barnard and Philpott, 1995
).
The smoothed total circulation was then differentiated along s to
estimate the circulation added to the fluid at each point along the body.
Comparison to 2D ideal flow
To examine the influence of effects from 3D flow relative to the ideal 2D
case, the amount of flow accelerated in a single coherent direction (mostly
laterally) was compared to the amount pushed up and down towards the dorsal
and ventral edges. A simple geometric representation E of how
effectively the fish avoids producing flows that cancel comes from the length
of the mean velocity vector, close to the body, relative to the mean of all
velocity vector lengths:
![]() | (8) |
denotes a mean. E
is the fraction of flow close to the body that is going in the same direction.
For example, an ideal 2D plate moving laterally would push all of the fluid
laterally (vertical flow does not exist, so v is defined to be 0, and
u2+v2
=
u2
) and would therefore have an E of
1. In contrast, a 3D plate pushes some flow laterally and some up and down
(any individual v is non-zero, but
v2
is small because up and down motion averages to zero) and thus has
E<1. The momentum from the vertical flows cancels out, and thus
they are wasted for the purposes of producing thrust or lateral forces. This
is not to infer that all vertical flows cancel out for a swimming fish, but
the momentum that does cancel is not useful for steady swimming. The mean was
taken over a line parallel to the body at a distance of twice the average
spacing of PIV vectors from the surface. The metric E is related to the added streamwise circulation, as estimated above, because the vertical flows will form tip vortices when they reach the dorsal and ventral edges. In principle, a more physical representation of the losses the fish incurs due to its 3D shape would therefore be based on the added circulation. However, E was used because of its simplicity, both for calculating and for understanding it.
Statistics
Midline kinematics were compared among individuals using single-factor
analysis of variance (ANOVA) on each parameter individually, with individual
as a random effect (Milliken and Johnson,
1992
). Additionally, tail beat amplitudes at the center of the
tail and the upper and lower margins were compared using a two-factor mixed
model ANOVA, with a fixed effect of position and a random effect of
individual. The same test was performed for the outer and inner edges of the
anterior median fins.
The peak circulations of all vortices were compared using a two-factor
mixed-model ANOVA, excluding those vortices whose sources could not be
identified. The fixed effect in the model was the vortex source, while the
random effect was the individual fish. In all mixed-model ANOVAs, care was
taken to use the correct denominator in testing for each effect, taking into
account the unbalanced data set (for a discussion of unbalanced mixed-model
ANOVAs, see Milliken and Johnson,
1992
). Post hoc pairwise comparisons were performed using
Tukey's honestly significant difference
(Milliken and Johnson,
1992
).
Means are reported with standard errors and numbers of measurements, where appropriate. All ANOVAs were performed using JMP 5.1 (SAS Institute, Cary, NC, USA), while regressions were performed in Matlab.
| Results |
|---|
|
|
|---|
At least four steady tail beats at each position were recorded, resulting in 102 total tail beats. One individual did not swim steadily at the most anterior position. Fig. 2 shows the number of tail beats for each individual at each position. Fish typically drifted forward and backward during a sequence by less than 3 mm and never drifted more than 1 cm. Stride length was 0.0061±0.0004L.
|
The fins appeared in the laser light sheet as bright lines (Fig. 1C), allowing an estimation of the dorso-ventral curvature of the trailing edges of the caudal, dorsal, and anal fins. Fig. 3 shows representative tracings of the three fins from one half tail beat. Beat frequency was 4.9±0.3 Hz, and did not differ among fins (F6,291=0.32; P=0.926). The dorsal and anal fins tended to reach maximum lateral excursion 42% of a period earlier than the caudal fin. The caudal fin curved both upper and lower edges into the flow, with the tips showing a distinct cupping motion, separate from the motion of the center (Fig. 3C). Over the same time period, the upper and lower tips of the caudal fin traversed a distance of 0.118±0.004L and 0.108±0.003L, respectively (22 and 20 mm for L=183 mm, the mean total length) while the center moved 0.070±0.002L (12.9 mm). The ANOVA showed a significant difference among the three positions (F2,6.13=12.39; P=0.007) in 49 tail beats near the tail tip, and post hoc tests using Tukey's honestly significant difference at a significance level of 0.05 showed that upper and lower tip amplitudes were not significantly different, but they were both different from the center. Individuals showed no evidence of significant variation (F3,6.00=3.26; P=0.101). Additionally, the upper and lower tips did not appear to differ in phase from each other, but they both usually led the center by about 9% of the tail beat cycle (as Fig. 3 shows). Comparing excursions for dorsal and anal fin inner and outer edges showed a significant difference among positions (F3,6.22=7.32; P=0.019) for 18 tail beats near the fins. Post hoc tests at a level of 0.05 indicated that dorsal and anal fins' outer edges moved the same distance, 0.057±0.003L (10.5 mm), but the anal fin's inner edge moved significantly less than the outer edge, 0.041±0.002L (7.6 mm). The dorsal fin inner edge, in contrast, covered the same distance as the outer edge. Individuals showed significant variation (F3,6.01=20.46; P=0.002).
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Streamwise vortex structure
A primary result of this study is the identification of streamwise vortices
formed at different points along the fish's body. Vortices shed at eight
locations along the fish's body were identified
(Fig. 4): the dorsal and
ventral tips of the caudal fin, the angled ventral edge of the dorsal lobe of
the caudal fin (the upper caudal fin notch), the dorsal edge of the ventral
lobe of the caudal fin (the lower caudal fin notch), and the dorsal and
ventral edges of both the soft dorsal fin and the anal fin. Additionally,
vortices were tentatively identified as being shed off the dorsal and ventral
edges of the caudal peduncle, although they were difficult to identify
definitively because the caudal fin often blocked the view of the peduncle.
Vortices from the pectoral fin were also observed as they convected through
the light sheet, but are not included in the present analysis. Outer vortices
from the anal and dorsal fin could be identified in posterior planes by their
phasing and position. Other vortices, including those from the peduncle and
the inner edges of the anterior median fins, could not be identified
definitively as they convected toward the caudal fin. Vortices unidentified in
posterior planes (such as the unlabeled vortices in
Fig. 4A) may thus have been
formed by the peduncle or the inner edges of the dorsal and anal fins, or by
other sources such as the pectoral and pelvic fins.
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|
This view differs from a true 3D flow field in two primary ways. First, it
includes only streamwise vortices, which is not possible in a real fluid. By
the Helmholtz vortex theorem, these vortices must be connected in some way to
form complete loops (Faber,
1995
). Second, it assumes that vortices do not interact with one
another and do not evolve over time. Although such evolution and interaction
is known to occur (e.g. Tytell,
2004
), the view presented in
Fig. 5 is still useful for
understanding the 3D positions of streamwise vortices.
To verify that vortices identified in posterior planes as dorsal or anal
fin vortices were genuinely formed by the dorsal or anal fins, the timing of
peak circulation was investigated (Fig.
6). Position alone was not enough to identify the dorsal fin
vortex unambiguously. Fish often swam with their dorsal fins slightly lowered
and with their heads pitched somewhat downwards; as a result, outer dorsal fin
vortices often appeared on the same dorso-ventral level as the caudal fin tip
vortex, or sometimes even lower (Fig.
6A). For the same reason, the outer anal fin vortex was typically
much lower than the corresponding caudal fin vortex and could be identified
unambiguously by its position (Fig.
4A). For verification of the dorsal fin vortex, note that fluid
should flow from the trailing edge of the dorsal fin at approximately 70% of
body length to the tip of the caudal fin over a time
(0.3L)/U. Flow acceleration in this region of the body is
probably negligible and will never be larger than the 20% of U
observed in the wake by Drucker and Lauder
(Drucker and Lauder, 2001
).
Fig. 6B shows the timing of the
dorsal fin vortex circulation as measured at 0.7L and at
1.0L, showing that they are separated by the correct amount of
time.
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Spatial changes in circulation
A goal of this study was to examine how overall circulation changes along
the body, because circulation is approximately proportional to force. To
determine how much circulation changes in a given plane, though, the
circulation that convects in from planes further upstream must be removed.
This requires taking the derivative with respect to body position. However,
the raw data were too noisy to differentiate directly; therefore, a smooth
regression model of the vortex circulation was developed.
Separate regressions were performed on circulation from each the vortices, including evolution over time as well as space. This regression indicated that some circulation may indeed decrease at the base of the caudal fin. A coordinate system that follows the mean flow was chosen. The assumption that vortices progress down the body at mean flow speed was tested in two ways. First, the position and time of peak vorticity of each vortex was plotted and compared visually to the flow speed and body wave speed. Vortex speed was much closer to flow speed than body wave speed (for an example, see Fig. 7A). Second, the regression models used (Eqn 4 and 5) allow some variation in vortex speed around the flow speed (i.e. phase can change nonlinearly along the body; see Materials and methods for an explanation).
|
Interaction with the body appears to change the observed circulation of individual vortices as they move with the flow (Fig. 7B). The measurements in this study cannot distinguish vortex reorientation (i.e. streamwise vortices becoming more vertical, or vice versa) from true changes in circulation, but both effects may be results from interactions with the body. All vortices except for the inner dorsal fin vortex had significant changes in circulation along the body (P<0.05 in all cases; Fig. 7B). The circulation oscillations were slightly asymmetric for all the major vortices (outer dorsal and anal fin vortices and both caudal fin tip vortices), meaning that the C parameters (intercepts) from Eqn 4 were significant. The intercepts were less than 12% of mean amplitude in all cases, but did show a bias towards stronger vortices on the fish's left, probably reflecting the fish's desire to escape the experimenter or the bright laser light, which were both on its left.
Fig. 7C shows the phase of the peak positive circulation as each vortex moves down the body. Most vortices track with the mean flow speed (shown with broken lines), although the caudal fin vortices have a velocity slightly (but significantly; P<0.05 in all cases) above mean flow, probably reflecting the acceleration of flow near the caudal fin.
The magnitude of circulation from each vortex, estimated through these regressions, was summed and differentiated along the body position. This allowed an estimate of the streamwise circulation added by each point along the body. Fig. 8 shows the estimated total circulation and its derivative. Note that circulation decreases near the caudal peduncle and occasionally along the caudal fin itself (blue regions in Fig. 8B). The mean circulation added over the whole tail beat period was estimated for 12 segments from 0.7 to 1.0L, each with length 0.025L (Fig. 9).
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|
Fig. 9 indicates that circulation is added primarily at three points: at the trailing edges of the dorsal and anal fins, about halfway down the caudal fin, and at the very tip of the caudal fin. These correspond to the dorsal and anal fin vortices, the creation of the caudal fin tip vortices, and the vortex shedding from the notch in the caudal fin. In contrast, the caudal peduncle and the base of the caudal fin appear to remove circulation, possibly indicating some vortex interaction between the caudal fin and the dorsal and anal fin vortices. Note that Fig. 8B shows a small region of circulation loss at near 0.95L; however, averaged over a full tail beat, this region of the body does add net circulation, as Fig. 9 shows. The pattern and approximate magnitudes shown in Fig. 9 were robust to all changes of polynomial and Fourier order in the regression model described above.
Comparison of circulation among vortices
Finally, the peak circulations of vortices from each fin were compared
using a two-way, mixed-model ANOVA with effects from vortex type (fixed
effect) and individual (random effect).
Table 1 summarizes the results,
and the least-squares means of the peak circulation of each vortex are given
in Fig. 10. Multiple
comparisons of the vortex strengths (using Tukey's honestly significant
difference) show that, with 95% confidence, the two caudal fin tip vortices
are not significantly different from one another or the outer dorsal fin
vortex, while the outer anal fin vortex is not significantly different from
the lower caudal fin tip vortex. The two vortices from the caudal fin notch
are not significantly different, either, but the outer dorsal fin vortex is
significantly stronger than the outer anal fin vortex.
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|
Comparison to 2D ideal flow
Fig. 11 shows an example of
the effectiveness E of the tail in accelerating flow in a single
direction, based on Eqn 8. Fig.
11A,B show examples of the flow accelerated up and down as the
tail moves from left to right and from right to left, respectively. Because of
the shadow cast in the laser light sheet, E could only be estimated
on one side of the tail at a time (termed `single-side effectiveness'). By
using the flow estimates from sequential half tail beats, a total
effectiveness was estimated. Fig.
11C shows both the single-side effectiveness and the estimated
total effectiveness for four example tail beats. The mean peak value of
E for the 32 half tail beats near the tail tip
(0.975L
s
1.025L) was 0.75±0.02.
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| Discussion |
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Three-dimensional vortex structure
Transverse flow patterns are quite complex. Streamwise vortices are shed
off the caudal fin, at the dorsal and ventral margins as well as at the
central notched region, and off the dorsal and anal fins, at both the dorsal
and ventral margins of each. By the Helmholtz vortex theorem
(Faber, 1995
), all of these
vortices must connect in some way to form loops. In
Fig. 12A,B, I propose a 3D
wake structure that incorporates the present measurements. Although the
pattern is complex, low-aspect ratio flapping foils also show similarly
intricate structures (Buchholz and Smits,
2006
; Dong et al.,
2005
; von Ellenrieder et al.,
2003
). The caudal notch vortices connect to form something like a
hairpin vortex within the overall vortex ring. The tail's cupping motion
elongates them more than might be expected from the shape of its trailing
edge, but they do not appear to connect to form a full `ring-within-a-ring'
structure, observed by Wilga and Lauder from shark tails
(Wilga and Lauder, 2004
).
|
Although the vortex structure proposed appears much more complex than
previous portrayals (e.g. Lauder,
2000
), it is consistent with them. Any horizontal section would
find two strong centers of vorticity arrayed in a reverse von
Kármán street, as observed for carangiform swimmers
(Drucker and Lauder, 2001
;
Müller et al., 1997
;
Nauen and Lauder, 2002a
), and
vertical sections would find two tip vortices for most of the cycle
(Nauen and Lauder, 2002a
;
Nauen and Lauder, 2002b
). It
is also numerically consistent with Drucker and Lauder's results from
similar-sized sunfish swimming at about the same speed
(Drucker and Lauder, 2001
).
Estimated from their published figures, sunfish swimming at 1.1 L
s1 produce vertical vortices from the caudal fin with
circulations near 1000 mm2 s1, comparable to the
measured streamwise vortex circulations.
However, Fig. 12 makes several easily tested predictions of effects that have not previously been observed. In particular, there should be a shift in the timing and spacing of vertical vortices among horizontal planes at the midline versus upper or lower planes, as indicated by the horizontal projection in Fig. 12A. Additionally, observations of flow in a vertical plane should identify the caudal notch vortices.
Do these notch vortices have a functional significance? Wilga and Lauder
proposed that the ring-within-a-ring structure from a shark's tail might
enhance maneuverability, by allowing sharks to tune the force production
precisely (Wilga and Lauder,
2004
). The caudal notch vortices may be the evidence of similar
abilities in the sunfish; namely, each lobe of the caudal fin is independently
controlled and can produce different forces. In steady swimming, the caudal
notch vortices are equal in strength (Fig.
10), but they need not be. An imbalance in the two vortices would
allow fine tuning of pitching and rolling moments produced by the tail during
steady swimming. Larger imbalances might be used during maneuvers.
The notch vortices also have a disadvantage: they cause the tail to
transmit force less efficiently. A circular vortex ring would be more
efficient at producing thrust than the loop shown in
Fig. 12
(Lighthill, 1970
). Thus, the
vortices may be evidence of a trade-off between maneuvering capabilities and
swimming efficiency.
The mechanical properties of the tail and its kinematics may determine
whether caudal notch vortices are produced. Nauen and Lauder, using PIV in a
vertical plane, did not observe these vortices from mackerel
(Nauen and Lauder, 2002a
),
despite the deep fork in their tails. One explanation is that their
measurements may have lacked the resolution necessary to detect these vortices
(they estimated approximately 20 vectors over the tail height, while about 90
vectors were estimated in this study). More interestingly, though, if mackerel
genuinely do not produce caudal notch vortices, it may indicate the different
specializations of mackerel and bluegill sunfish. Mackerels' stiffer tails and
lack of the cupping motion (Gibb et al.,
1999
) may allow them to produce a more efficient, more circular
vortex ring wake, better suited to steady long distance swimming.
Additionally, the higher aspect ratio of their tail fin may mitigate some of
the 3D losses, estimated with E. Sunfish, in contrast, may sacrifice
some propulsive efficiency for a less-rigid tail that enables them to maneuver
more precisely.
It should also be noted that the notch vortices, while convincingly shown in the near wake (Fig. 4A,C), are not hydrodynamically stable. The notched vortex loop depicted in Fig. 12 assumes little interaction between them over time, which is probably not a valid assumption. Thus, in the far wake, the 3D stru