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Fig. 2. Alignment of the fast/developmental and IIM MYH genes. To construct a
sequence phylogeny, the amino acid sequences of the human embryonic, IIA, IIX,
IIB, IIM, perinatal, cardiac
and ß and MYH13 MYH gene sequence
were aligned using Clustal X (Thompson et
al., 1997). The high level and continuity of sequence conservation
among striated muscle myosins made it possible to use low penalties for gap
introduction and extension without introducing spurious gaps. Low values were
necessary to properly align both the N- and C-terminal sequences.
*, colon and stop mark positions with identical, strongly or weakly
conserved amino acids, respectively. Color indicates the chemical
characteristics of amino acids: light blue, hydrophobic; purple, acidic; dark
blue, H and Y; green, N, Q, S and T; dark brown, R, K and C; light brown, G;
yellow, P. A white background marks non-conserved residues.