First published online September 5, 2008
Journal of Experimental Biology 211, 2950-2959 (2008)
Published by The Company of Biologists 2008
doi: 10.1242/jeb.020453
Swimming kinematics and hydrodynamic imaging in the blind Mexican cave fish (Astyanax fasciatus)
Shane P. Windsor1,*,
Delfinn Tan1 and
John C. Montgomery1,2
1 School of Biological Sciences, University of Auckland, Private Bag 92019,
Auckland, New Zealand
2 Leigh Marine Laboratory, University of Auckland, Private Bag 92019, Auckland,
New Zealand

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Fig. 1. Experimental setup to record swimming kinematics of blind cave fish using
digital video cameras. Setup shown is for head-on trials. Setup for parallel
trials was similar except the divider in the centre of the tank was not
present. (A) Side view. (B) Top view.
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Fig. 2. Image processing algorithm to extract kinematic parameters from far camera
footage. (A) Original image. (B) Image with background subtracted. (C) Result
of thresholding by intensity. Skeletonised midline shown with measurements
D1 and D2 of body width one-sixth of
the way down the midline from each end. The wider end was taken to be the
head. (D) Fitted midline approximation with the first third linear and the
remaining two thirds represented by a fifth order polynomial. The centre of
area is marked by X and the nose of the fish by O.
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Fig. 3. Parameters measured in head-on approaches where fish avoided the wall. The
first sign that a fish had detected the wall was the rapid extension of the
pectoral fins (solid outline). At this point the orientation of the fish
relative to the wall ( ) was measured by fitting a straight line to the
position of the fish's nose in the previous four video frames (dashed
outlines). The distance between the wall and the nose of the fish (d)
was also measured down this line. The velocity of the fish (v) was
calculated from the nose position using B-spline fitting by generalised
cross-validation and taking the first derivative.
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Fig. 4. Kinematic parameters measured from far footage of parallel trials. (A)
Image series of a blind cave fish swimming along a wall showing the
corresponding kinematic parameters. (B) Velocity of the centre of area of the
fish. (C) Tail angle of the fish; tail beats to the left correspond to
negative angles, those to the right to positive angles. (D) Swimming phase
classification based on tail angle and the rate of change of tail angle (not
shown). Double refers to a tail beat on both the right and left sides of the
fish, single left and single right refer to a tail beat on one side of the
fish only. (E) Classification by location in tank.
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Fig. 5. Series of images from close camera footage of a head-on trial with a fish
approaching the wall and avoiding collision. The fish glides towards the wall,
then at 100 ms extends the pectoral fins away from the body; at this point the
nose is 2.7 mm away from the wall. The fish then curves its body to the left,
turning to follow along the wall, without making any contact. Length of scale
bar is 1 cm.
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Fig. 6. Histogram of the distances at which the fish appeared to respond to the
wall by initiating a tight turn when approaching head-on. Grey bars represent
avoidances, black bar represents number of collisions with the wall.
Approaches of all fish pooled (N=12).
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Fig. 7. (A) Mean distance at which fish reacted to the wall plotted against body
length. (B) Mean distance at which fish reacted to the wall plotted against
the mean velocity that the fish was swimming at. Error bars show s.e.m. Number
of approaches per fish ranged from 6 to 21 with a mean of 13.
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Fig. 8. Series of images from close camera footage of a head-on trial with a fish
colliding with the wall. The fish starts a tail beat as it approaches the wall
and shows no sign of detecting the wall before it collides with it. After
colliding with the wall the fish turns to the left and swims along the wall.
Length of scale bar is 1 cm.
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Fig. 9. Series of images from close camera footage of a parallel trial showing
pectoral fin contact with the wall. The fish is gliding along the wall (line
near bottom of images) then beats its tail to the left side of its body. At
the start of the tail beat the pectoral fins are extended and the right fin
makes contact with the wall. This lasts for 60 ms before the fins are
retracted as the fish finishes the tail beat and resumes gliding. Length of
scale bar is 1 cm.
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© The Company of Biologists Ltd 2008