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Figure 2


Fig. 2. Phylogenetic tree of chordate COX homologues. Database searches were used to find COX homologues in Fugu and Ciona. The tree was constructed using the neighbor-joining method with Poisson-correction, and numbers indicate bootstrap values for 1000 replicates. All homologues are labeled by genus. GenBank accession numbers are, from top to bottom: COX1 – Homo (AAL33601), Mus (NP_032995), Gallus (XP_425326), Danio (NP_705942), Onchorhynchus (CAC10360), Salvelinus (AAF14529), Fugu 1a (FuguGenscan_21183), Fugu 1b (FuguGenscan_4741); COX2 – Homo (BAA05698), Mus (Q05769), Gallus (P27607), Danio (NP_705943), Onchorhynchus (CAB46017), Salvelinus (AAD45896), Fundulus (AAS21313), Fugu (FuguGenscan_3088); COXa – Ciona (scaffold 118), COXb – Ciona (scaffold 207). Scale bar represents 20% amino acid replacement per site.